Prem P. SinghPlant scientist · Data scientist

Methods, made visible.

Four ways to turn biological and public data into a decision you can inspect.

  • A Bad Year, or a Bad Place?
    Built in
    Grapevine Red Blotch Virus gene data, UC Davis
    Re-tested on
    World crop yield data, 1961-2023 (FAOSTAT)

    Variance breakdown

    A Bad Year, or a Bad Place?

    One model gave the wrong picture. Looking at each crop separately showed that place usually matters much more than year.

    Linked to country
    69.1%
    Linked to year
    5.6%
    Data points
    305,676
    Crops
    63
  • When More Records Do Not Mean More Disease
    Built in
    GBIF occurrence data for Xylella fastidiosa
    Re-tested on
    Country-level outbreak surveillance

    Effort normalization

    When More Records Do Not Mean More Disease

    Normalize pathogen observations by reporting effort so the map reflects surveillance intensity instead of simply rewarding countries that publish more data.

    Records
    1,170
    Mapped
    309
    United States
    7th
    Portugal
    0
  • Count Research Relative to the Crop
    Built in
    OpenAlex AI plant-disease publications
    Re-tested on
    FAOSTAT world crop production, 2023

    Exposure normalization

    Count Research Relative to the Crop

    Compare AI plant-disease research with crop production so publication volume is interpreted against agricultural scale rather than as an isolated count.

    Records
    170,605
    Tomato papers
    2,848
    Attention gap
    11.5×
    AI share
    1 in 7
  • Is It the Heat, or the Virus?
    Built in
    Grapevine Red Blotch Virus transcriptomics, UC Davis
    Re-tested on
    FAOSTAT world crop production, 1961-2023

    Causal mediation

    Is It the Heat, or the Virus?

    Split one biological signal into direct and virus-mediated routes, then test the same model on 63 years of crop data.

    Via virus
    61.8%
    Genes
    39
    Via land
    97.2%
    Bootstraps
    2,000